tRNA Gene Summary

Overview
High confidence set 931
tRNAs decoding standard 20 AA 929
Selenocysteine tRNAs (TCA) 2
Notable atypical predictions  
Anticodon/isotype mismatch 13
Unexpected anticodons 3
Non-canonical anticodon loop length 1
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 9034
Secondary filter (low feature scores, possible rep. element) 408
Tertiary filter (excessive isotype copies, possible rep. element) 96

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 122)
Ala TGC
1
Gly ACC
1
Gly CCC
1
Gly TCC
1
Pro GGG
1
Pro CGG
9
Pro TGG
1
Thr GGT
2
Thr CGT
6
Thr TGT
2
Val AAC
1
Val CAC
5
Ser GGA
1
Ser TGA
1
Ser ACT
1
Ser GCT
1
Arg TCG
4
Arg CCT
1
Arg TCT
2
Leu AAG
4
Leu GAG
1
Leu CAG
2
Leu TAG
2
Leu CAA
6
Asn GTT
2
Asp ATC
1
Glu CTC
2
Glu TTC
1
His GTG
1
Ile TAT
14
Met CAT
5
Tyr ATA
1
Tyr GTA
31
Supres TCA
3
Cys ACA
1
Trp CCA
2
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
56
GGC
219
CGC
41
TGC
47
363
GlyACC
3
GCC
68
CCC
17
TCC
2005
2093
ProAGG
23
GGG
10
CGG
27
TGG
98
158
ThrAGT
49
GGT
20
CGT
1431
TGT
239
1739
ValAAC
37
GAC
24
CAC
1619
TAC
47
1727
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
57
GGA
395
CGA
85
TGA
189
ACT
4
GCT
23
 
 
 
 
753
ArgACG
32
GCG
7
CCG
3
TCG
85
 
 
 
 
CCT
54
TCT
75
256
LeuAAG
30
GAG
21
CAG
19
TAG
24
 
 
 
 
CAA
46
TAA
35
175
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
3
GAA
43
 
 
 
 
46
AsnATT
1
GTT
73
 
 
 
 
74
Lys 
 
 
 
CTT
104
TTT
75
179
AspATC
11
GTC
551
 
 
 
 
562
Glu 
 
 
 
CTC
127
TTC
84
211
HisATG
24
GTG
495
 
 
 
 
519
Gln 
 
 
 
CTG
28
TTG
38
66
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
85
GAT
5
CAT
 
TAT
43
133
iMet/Met 
 
 
 
CAT
53/813
 
 
866
TyrATA
6
GTA
195
 
 
 
 
201
Supres 
 
TCA
38
CTA
5
TTA
10
53
CysACA
8
GCA
126
 
 
 
 
134
Trp 
 
 
 
CCA
30
 
 
30
SelCys 
 
 
 
 
 
TCA
2
2