tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0 (December 2017) scan results 
Started: Thu Jan  4 18:08:55 PST 2018

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Mito isotype model scan:           mammal
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         613
Seqs w/at least 1 hit:  436
Bases read:             2501912388 (x2 for both strands)
Bases in tRNAs:         11693420
tRNAs predicted:        165126
Av. tRNA length:        70
Script CPU time:        532.97 s
Scan CPU time:          39050.27 s
Scan speed:             128.1 Kbp/sec

First pass search(es) ended: Thu Jan  4 18:51:03 PST 2018

Infernal Stats:
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Candidate tRNAs read:     165126
Infernal-confirmed tRNAs:     63233
Bases scanned by Infernal:  14995940
% seq scanned by Infernal:  0.3 %
Script CPU time:          720.58 s
Infernal CPU time:            44953.82 s
Scan speed:               333.6 bp/sec

Infernal analysis of tRNAs ended: Fri Jan  5 10:08:15 PST 2018

Overall scan speed: 58690.6 bp/sec