tRNA Gene Summary

Overview
High confidence set 472
tRNAs decoding standard 20 AA 471
Selenocysteine tRNAs (TCA) 1
Notable atypical predictions  
Anticodon/isotype mismatch 21
Unexpected anticodons 1
Non-canonical anticodon loop length 1
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 58930
Secondary filter (low feature scores, possible rep. element) 3761
Tertiary filter (excessive isotype copies, possible rep. element) 39

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 2622)
Ala AGC
12
Ala GGC
12
Ala TGC
4
Gly ACC
11
Gly GCC
103
Gly CCC
4
Gly TCC
4
Pro AGG
52
Pro GGG
6
Pro TGG
4
Thr AGT
25
Thr GGT
11
Thr CGT
4
Thr TGT
22
Val AAC
5
Val GAC
10
Val TAC
3
Ser AGA
3
Ser GGA
1
Ser CGA
2
Ser TGA
1
Ser ACT
19
Ser GCT
81
Arg ACG
2
Arg CCG
1
Arg TCG
1
Arg CCT
1
Arg TCT
9
Leu AAG
1
Leu GAG
1
Leu CAG
6
Leu TAG
1
Leu CAA
7
Phe GAA
3
Asn ATT
13
Asn GTT
130
Lys CTT
5
Lys TTT
15
Asp ATC
128
Asp GTC
1615
Glu CTC
23
Glu TTC
102
His ATG
8
His GTG
37
Gln CTG
6
Gln TTG
7
Ile AAT
3
Ile GAT
5
Ile TAT
7
Met CAT
3
Tyr ATA
6
Tyr GTA
31
Supres TCA
4
Supres CTA
12
Supres TTA
3
Cys ACA
6
Cys GCA
19
Trp CCA
2
 
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
1988
GGC
255
CGC
26
TGC
108
2377
GlyACC
53
GCC
410
CCC
18
TCC
124
605
ProAGG
35897
GGG
1457
CGG
63
TGG
145
37562
ThrAGT
4401
GGT
403
CGT
93
TGT
113
5010
ValAAC
94
GAC
68
CAC
18
TAC
37
217
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
758
GGA
47
CGA
367
TGA
56
ACT
89
GCT
140
 
 
 
 
1457
ArgACG
89
GCG
6
CCG
7
TCG
9
 
 
 
 
CCT
18
TCT
34
163
LeuAAG
774
GAG
37
CAG
38
TAG
24
 
 
 
 
CAA
212
TAA
15
1100
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
25
GAA
26
 
 
 
 
51
AsnATT
114
GTT
613
 
 
 
 
727
Lys 
 
 
 
CTT
42
TTT
405
447
AspATC
647
GTC
7521
 
 
 
 
8168
Glu 
 
 
 
CTC
211
TTC
3045
3256
HisATG
120
GTG
104
 
 
 
 
224
Gln 
 
 
 
CTG
50
TTG
74
124
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
254
GAT
35
CAT
 
TAT
16
305
iMet/Met 
 
 
 
CAT
12/48
 
 
60
TyrATA
14
GTA
76
 
 
 
 
90
Supres 
 
TCA
107
CTA
17
TTA
51
175
CysACA
24
GCA
57
 
 
 
 
81
Trp 
 
 
 
CCA
23
 
 
23
SelCys 
 
 
 
 
 
TCA
1
1