tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 14:45:55 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         2342
Seqs w/at least 1 hit:  67
Bases read:             36480513 (x2 for both strands)
Bases in tRNAs:         12699
tRNAs predicted:        136
Av. tRNA length:        93
Script CPU time:        7.35 s
Scan CPU time:          461.69 s
Scan speed:             158.0 Kbp/sec

First pass search(es) ended: Tue Aug 22 14:58:04 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     136
Infernal-confirmed tRNAs:     133
Bases scanned by Infernal:  15419
% seq scanned by Infernal:  0.0 %
Script CPU time:          2.45 s
Infernal CPU time:            134.95 s
Scan speed:               114.3 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 15:01:04 PDT 2017

Overall scan speed: 120310.4 bp/sec