tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 120
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 1
tRNAs with undetermined or unknown isotypes 3
Predicted pseudogenes 9
Total tRNAs 133
Intron Summary (tRNAs with introns: 76)
Ala AGC
6
Ala CGC
1
Ala TGC
1
Gly GCC
6
Gly CCC
2
Pro AGG
4
Pro CGG
1
Pro TGG
1
Thr AGT
1
Thr TGT
2
Val CAC
2
Val TAC
1
Ser CGA
1
Ser TGA
1
Ser GCT
2
Arg CCG
1
Arg TCG
2
Arg CCT
1
Arg TCT
2
Leu AAG
3
Leu CAG
2
Leu TAG
1
Leu CAA
1
Leu TAA
2
Phe GAA
3
Asn GTT
1
Lys CTT
5
Lys TTT
2
Asp ATC
1
Asp GTC
1
Glu CTC
4
Glu TTC
2
His GTG
2
Ile AAT
2
Ile TAT
1
Met CAT
2
Tyr GTA
1
Cys GCA
1
Trp CCA
1
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 145955

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
6
GGC
 
CGC
1
TGC
3
10
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
 
GCC
6
CCC
2
TCC
4
12
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
4
GGG
 
CGG
1
TGG
2
7
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
3
GGT
 
CGT
 
TGT
2
5
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
4
GAC
 
CAC
3
TAC
2
9
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
3
GGA
 
CGA
3
TGA
1
ACT
 
GCT
2
 
 
 
 
9
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
4
GCG
 
CCG
1
TCG
2
 
 
 
 
CCT
1
TCT
3
11
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
3
GAG
 
CAG
2
TAG
1
 
 
 
 
CAA
1
TAA
3
10
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
1
GAA
4
 
 
 
 
5
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
1
GTT
2
 
 
 
 
3
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
5
TTT
3
8
 
 
 
 
AAG
0
AAA
0
0%
AspATC
1
GTC
6
 
 
 
 
7
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
5
TTC
3
8
 
 
 
 
GAG
0
GAA
0
0%
HisATG
 
GTG
3
 
 
 
 
3
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
4
TTG
1
5
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
2
GAT
 
 
 
TAT
1
3
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
2/5
 
 
7
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
1
CTA
 
TTA
 
1
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
2
 
 
 
 
2
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
2
 
 
2
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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