tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 15:16:42 PDT 2017

------------------------------------------------------------
Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
------------------------------------------------------------

First-pass Stats:
---------------
Sequences read:         2802
Seqs w/at least 1 hit:  72
Bases read:             34390047 (x2 for both strands)
Bases in tRNAs:         12542
tRNAs predicted:        134
Av. tRNA length:        93
Script CPU time:        8.18 s
Scan CPU time:          526.33 s
Scan speed:             130.7 Kbp/sec

First pass search(es) ended: Tue Aug 22 15:31:26 PDT 2017

Infernal Stats:
-----------
Candidate tRNAs read:     134
Infernal-confirmed tRNAs:     132
Bases scanned by Infernal:  15222
% seq scanned by Infernal:  0.0 %
Script CPU time:          2.55 s
Infernal CPU time:            138.04 s
Scan speed:               110.3 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 15:34:32 PDT 2017

Overall scan speed: 101881.3 bp/sec