tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0.1 (March 2018) scan results 
Started: Mon Mar 19 16:44:13 PDT 2018

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         735943
Seqs w/at least 1 hit:  12125
Bases read:             13427353622 (x2 for both strands)
Bases in tRNAs:         1057936
tRNAs predicted:        14594
Av. tRNA length:        72
Script CPU time:        2663.36 s
Scan CPU time:          160899.81 s
Scan speed:             166.9 Kbp/sec

First pass search(es) ended: Thu Mar 22 22:32:37 PDT 2018

Infernal Stats:
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Candidate tRNAs read:     14594
Infernal-confirmed tRNAs:     11845
Bases scanned by Infernal:  1349512
% seq scanned by Infernal:  0.0 %
Script CPU time:          337.36 s
Infernal CPU time:            13502.77 s
Scan speed:               99.9 bp/sec

Infernal analysis of tRNAs ended: Fri Mar 23 05:17:27 PDT 2018

Overall scan speed: 151376.6 bp/sec