tRNA Gene Summary

Overview
High scoring set 1434
tRNAs decoding standard 20 AA 1434
Selenocysteine tRNAs (TCA) 0
Notable atypical predictions  
Anticodon/isotype mismatch 6
Unexpected anticodons 7
Non-canonical anticodon loop length 3
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 2508
Secondary filter (low feature scores, possible rep. element) 6339
Tertiary filter (excessive isotype copies, possible rep. element) 1548

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 320)
Ala AGC
2
Ala GGC
1
Gly CCC
2
Gly TCC
2
Thr CGT
5
Val AAC
3
Val CAC
1
Val TAC
1
Ser CGA
1
Ser GCT
1
Leu AAG
2
Leu GAG
3
Leu TAG
34
Leu CAA
2
Leu TAA
4
Phe GAA
1
Asn GTT
2
Lys CTT
16
Lys TTT
1
Asp ATC
1
Asp GTC
1
Glu CTC
1
His ATG
1
His GTG
1
Ile AAT
4
Ile GAT
3
Ile TAT
10
Met CAT
152
Tyr ATA
2
Tyr GTA
57
Supres TTA
2
Cys GCA
1
 
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
167
GGC
6
CGC
51
TGC
54
278
GlyACC
3
GCC
163
CCC
65
TCC
58
289
ProAGG
86
GGG
2
CGG
40
TGG
136
264
ThrAGT
72
GGT
27
CGT
56
TGT
82
237
ValAAC
110
GAC
37
CAC
74
TAC
23
244
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
61
GGA
62
CGA
42
TGA
79
ACT
2
GCT
130
 
 
 
 
376
ArgACG
139
GCG
2
CCG
29
TCG
25
 
 
 
 
CCT
76
TCT
61
332
LeuAAG
83
GAG
6
CAG
44
TAG
87
 
 
 
 
CAA
81
TAA
23
324
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
4
GAA
145
 
 
 
 
149
AsnATT
106
GTT
201
 
 
 
 
307
Lys 
 
 
 
CTT
6262
TTT
233
6495
AspATC
14
GTC
231
 
 
 
 
245
Glu 
 
 
 
CTC
436
TTC
95
531
HisATG
27
GTG
145
 
 
 
 
172
Gln 
 
 
 
CTG
63
TTG
162
225
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
129
GAT
55
CAT
 
TAT
48
232
iMet/Met 
 
 
 
CAT
104/464
 
 
568
TyrATA
8
GTA
110
 
 
 
 
118
Supres 
 
TCA
11
CTA
14
TTA
7
32
CysACA
8
GCA
143
 
 
 
 
151
Trp 
 
 
 
CCA
119
 
 
119
SelCys 
 
 
 
 
 
TCA
 
0