tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 15:34:42 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         60
Seqs w/at least 1 hit:  19
Bases read:             36402801 (x2 for both strands)
Bases in tRNAs:         10992
tRNAs predicted:        110
Av. tRNA length:        99
Script CPU time:        3.70 s
Scan CPU time:          155.69 s
Scan speed:             467.6 Kbp/sec

First pass search(es) ended: Tue Aug 22 15:35:16 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     110
Infernal-confirmed tRNAs:     109
Bases scanned by Infernal:  13192
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.23 s
Infernal CPU time:            98.31 s
Scan speed:               134.2 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 15:37:08 PDT 2017

Overall scan speed: 281178.7 bp/sec