tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 329
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 1
Predicted pseudogenes 0
Total tRNAs 330
Intron Summary (tRNAs with introns: 71)
Pro TGG
13
Ser CGA
2
Ser GCT
6
Leu TAG
2
Leu CAA
9
Phe GAA
12
Lys TTT
9
Ile TAT
2
Tyr GTA
9
Trp CCA
7
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 5389
Number of Codons: 2931398

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
19
GGC
 
CGC
 
TGC
5
24
GCT
2.1
GCC
0.8
GCG
0.21
GCA
1.5
4.61%
GlyACC
 
GCC
23
CCC
1
TCC
3
27
GGT
2.42
GGC
0.55
GGG
0.55
GGA
0.8
4.32%
ProAGG
1
GGG
 
CGG
 
TGG
13
14
CCT
1.36
CCC
0.4
CCG
0.24
CCA
2.22
4.22%
ThrAGT
15
GGT
 
CGT
1
TGT
3
19
ACT
2.85
ACC
0.94
ACG
0.38
ACA
2.15
6.32%
ValAAC
18
GAC
 
CAC
1
TAC
2
21
GTT
2.19
GTC
0.77
GTG
0.62
GTA
1.22
4.8%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
17
GGA
 
CGA
2
TGA
4
ACT
 
GCT
6
 
 
 
 
29
TCT
2.9
TCC
1.08
TCG
0.56
TCA
2.61
AGT
1.66
AGC
0.58
 
 
 
 
9.39%
ArgACG
4
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
13
19
CGT
0.68
CGC
0.12
CGG
0.09
CGA
0.27
 
 
 
 
AGG
0.42
AGA
2.31
3.89%
LeuAAG
 
GAG
1
CAG
 
TAG
2
 
 
 
 
CAA
9
TAA
12
24
CTT
0.95
CTC
0.27
CTG
0.39
CTA
1.1
 
 
 
 
TTG
2.02
TTA
4.65
9.38%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
12
 
 
 
 
12
TTT
2.85
TTC
1.5
 
 
 
 
4.35%
AsnATT
 
GTT
11
 
 
 
 
11
AAT
6.2
AAC
1.81
 
 
 
 
8.01%
Lys 
 
 
 
CTT
15
TTT
9
24
 
 
 
 
AAG
2.21
AAA
5.2
7.41%
AspATC
 
GTC
19
 
 
 
 
19
GAT
4.84
GAC
0.99
 
 
 
 
5.83%
Glu 
 
 
 
CTC
1
TTC
16
17
 
 
 
 
GAG
1.08
GAA
4.98
6.06%
HisATG
 
GTG
7
 
 
 
 
7
CAT
1.68
CAC
0.39
 
 
 
 
2.07%
Gln 
 
 
 
CTG
1
TTG
10
11
 
 
 
 
CAG
0.63
CAA
3.32
3.95%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
17
GAT
 
 
 
TAT
2
19
ATT
4.17
ATC
1.52
 
 
ATA
1.84
7.53%
iMet/Met 
 
 
 
CAT
6/5
 
 
11
 
 
 
 
ATG
1.98
 
 
1.98%
TyrATA
 
GTA
9
 
 
 
 
9
TAT
2.6
TAC
0.8
 
 
 
 
3.4%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.08
TAG
0.07
TAA
0.17
0.32%
CysACA
 
GCA
5
 
 
 
 
5
TGT
0.8
TGC
0.27
 
 
 
 
1.07%
Trp 
 
 
 
CCA
7
 
 
7
 
 
 
 
TGG
0.94
 
 
0.94%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
-