tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 84
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 1
tRNAs with undetermined or unknown isotypes 4
Predicted pseudogenes 15
Total tRNAs 104
Intron Summary (tRNAs with introns: 54)
Ala AGC
1
Ala CGC
1
Ala TGC
1
Gly CCC
2
Pro AGG
2
Pro CGG
1
Pro TGG
1
Val AAC
4
Val CAC
2
Ser CGA
1
Ser TGA
2
Arg CCT
2
Arg TCT
2
Leu AAG
1
Leu CAG
1
Leu TAG
1
Phe GAA
2
Lys CTT
1
Lys TTT
2
Glu CTC
5
Glu TTC
3
His ATG
2
His GTG
6
Gln CTG
1
Gln TTG
1
Ile AAT
1
Ile TAT
2
Met CAT
1
Tyr GTA
2
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 37392

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
3
GGC
 
CGC
1
TGC
2
6
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
 
GCC
4
CCC
2
TCC
3
9
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
2
GGG
 
CGG
1
TGG
1
4
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
2
GGT
 
CGT
 
TGT
1
3
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
4
GAC
 
CAC
2
TAC
2
8
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
2
GGA
 
CGA
3
TGA
3
ACT
 
GCT
 
 
 
 
 
8
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
2
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
2
TCT
3
8
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
2
GAG
 
CAG
1
TAG
1
 
 
 
 
CAA
 
TAA
2
6
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
4
 
 
 
 
4
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
1
TTT
4
5
 
 
 
 
AAG
0
AAA
0
0%
AspATC
 
GTC
4
 
 
 
 
4
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
5
TTC
4
9
 
 
 
 
GAG
0
GAA
0
0%
HisATG
2
GTG
7
 
 
 
 
9
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
1
GAT
 
 
 
TAT
2
3
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
2/4
 
 
6
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
2
 
 
 
 
2
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
1
CTA
 
TTA
 
1
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
 
 
 
 
 
0
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
 
 
 
0
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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