tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 16:49:58 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         177
Seqs w/at least 1 hit:  44
Bases read:             32681481 (x2 for both strands)
Bases in tRNAs:         17451
tRNAs predicted:        199
Av. tRNA length:        87
Script CPU time:        3.65 s
Scan CPU time:          159.54 s
Scan speed:             409.7 Kbp/sec

First pass search(es) ended: Tue Aug 22 16:51:17 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     199
Infernal-confirmed tRNAs:     199
Bases scanned by Infernal:  21431
% seq scanned by Infernal:  0.0 %
Script CPU time:          2.42 s
Infernal CPU time:            153.06 s
Scan speed:               140.0 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 16:54:30 PDT 2017

Overall scan speed: 205111.8 bp/sec