tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 17:02:28 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         533
Seqs w/at least 1 hit:  55
Bases read:             23116446 (x2 for both strands)
Bases in tRNAs:         7542
tRNAs predicted:        85
Av. tRNA length:        88
Script CPU time:        3.75 s
Scan CPU time:          161.49 s
Scan speed:             286.3 Kbp/sec

First pass search(es) ended: Tue Aug 22 17:06:03 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     85
Infernal-confirmed tRNAs:     84
Bases scanned by Infernal:  9242
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.78 s
Infernal CPU time:            83.02 s
Scan speed:               111.3 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 17:08:07 PDT 2017

Overall scan speed: 184902.0 bp/sec