tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 81
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 1
Total tRNAs 82
Intron Summary (tRNAs with introns: 47)
Ala CGC
1
Gly TCC
2
Pro AGG
2
Pro CGG
1
Pro TGG
2
Thr AGT
1
Thr CGT
1
Thr TGT
1
Val CAC
1
Val TAC
1
Ser AGA
2
Ser GGA
1
Ser CGA
1
Ser GCT
2
Arg TCG
2
Arg CCT
1
Arg TCT
1
Leu AAG
2
Leu CAG
1
Leu TAG
1
Leu CAA
1
Phe GAA
2
Asn GTT
2
Lys CTT
1
Lys TTT
1
Asp GTC
3
His GTG
1
Gln CTG
2
Ile AAT
1
Ile TAT
1
Met CAT
2
Tyr GTA
2
Cys GCA
1
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 8028
Number of Codons: 4291505

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
3
GGC
 
CGC
1
TGC
2
6
GCT
2.04
GCC
1.92
GCG
1.1
GCA
1.83
6.89%
GlyACC
 
GCC
4
CCC
1
TCC
2
7
GGT
1.31
GGC
1.76
GGG
1.09
GGA
1.81
5.97%
ProAGG
2
GGG
 
CGG
1
TGG
2
5
CCT
1.73
CCC
1.52
CCG
1.35
CCA
2.01
6.61%
ThrAGT
3
GGT
 
CGT
1
TGT
1
5
ACT
1.49
ACC
1.72
ACG
1.18
ACA
1.58
5.97%
ValAAC
3
GAC
 
CAC
1
TAC
1
5
GTT
1.42
GTC
1.53
GTG
1.21
GTA
0.88
5.04%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
2
GGA
1
CGA
1
TGA
1
ACT
 
GCT
2
 
 
 
 
7
TCT
1.8
TCC
1.75
TCG
1.34
TCA
1.71
AGT
1.11
AGC
1.76
 
 
 
 
9.47%
ArgACG
2
GCG
 
CCG
1
TCG
2
 
 
 
 
CCT
1
TCT
1
7
CGT
1.01
CGC
1.14
CGG
1.12
CGA
1.4
 
 
 
 
AGG
1.39
AGA
1.81
7.87%
LeuAAG
2
GAG
 
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
6
CTT
1.75
CTC
1.95
CTG
1.89
CTA
1.26
 
 
 
 
TTG
1.56
TTA
0.88
9.29%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
2
 
 
 
 
2
TTT
1.53
TTC
1.87
 
 
 
 
3.4%
AsnATT
 
GTT
2
 
 
 
 
2
AAT
1.47
AAC
1.81
 
 
 
 
3.28%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
2.47
AAA
1.93
4.4%
AspATC
 
GTC
3
 
 
 
 
3
GAT
2.09
GAC
1.98
 
 
 
 
4.07%
Glu 
 
 
 
CTC
3
TTC
2
5
 
 
 
 
GAG
2.33
GAA
2.44
4.77%
HisATG
 
GTG
2
 
 
 
 
2
CAT
1.54
CAC
1.26
 
 
 
 
2.8%
Gln 
 
 
 
CTG
2
TTG
2
4
 
 
 
 
CAG
2.18
CAA
1.95
4.13%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
3
GAT
 
 
 
TAT
1
4
ATT
1.47
ATC
1.8
 
 
ATA
1.36
4.63%
iMet/Met 
 
 
 
CAT
2/2
 
 
4
 
 
 
 
ATG
2
 
 
2%
TyrATA
 
GTA
2
 
 
 
 
2
TAT
1.4
TAC
1.37
 
 
 
 
2.77%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
1.2
TAG
0.52
TAA
0.64
2.36%
CysACA
 
GCA
2
 
 
 
 
2
TGT
0.9
TGC
1.33
 
 
 
 
2.23%
Trp 
 
 
 
CCA
2
 
 
2
 
 
 
 
TGG
1.63
 
 
1.63%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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