tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 17:55:16 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         398
Seqs w/at least 1 hit:  94
Bases read:             124945702 (x2 for both strands)
Bases in tRNAs:         13950
tRNAs predicted:        171
Av. tRNA length:        81
Script CPU time:        14.41 s
Scan CPU time:          474.32 s
Scan speed:             526.8 Kbp/sec

First pass search(es) ended: Tue Aug 22 17:59:22 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     171
Infernal-confirmed tRNAs:     160
Bases scanned by Infernal:  17370
% seq scanned by Infernal:  0.0 %
Script CPU time:          3.12 s
Infernal CPU time:            148.65 s
Scan speed:               116.9 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 18:03:04 PDT 2017

Overall scan speed: 390150.5 bp/sec