tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 18:25:23 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         475
Seqs w/at least 1 hit:  95
Bases read:             35730243 (x2 for both strands)
Bases in tRNAs:         15709
tRNAs predicted:        167
Av. tRNA length:        94
Script CPU time:        5.11 s
Scan CPU time:          199.36 s
Scan speed:             358.4 Kbp/sec

First pass search(es) ended: Tue Aug 22 18:28:54 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     167
Infernal-confirmed tRNAs:     165
Bases scanned by Infernal:  19004
% seq scanned by Infernal:  0.0 %
Script CPU time:          3.34 s
Infernal CPU time:            163.40 s
Scan speed:               116.3 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 18:32:47 PDT 2017

Overall scan speed: 192506.9 bp/sec