tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Wed Aug 23 12:08:55 PDT 2017

------------------------------------------------------------
Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
------------------------------------------------------------

First-pass Stats:
---------------
Sequences read:         220
Seqs w/at least 1 hit:  23
Bases read:             3213516 (x2 for both strands)
Bases in tRNAs:         3528
tRNAs predicted:        47
Av. tRNA length:        75
Script CPU time:        0.74 s
Scan CPU time:          37.70 s
Scan speed:             170.5 Kbp/sec

First pass search(es) ended: Wed Aug 23 12:09:57 PDT 2017

Infernal Stats:
-----------
Candidate tRNAs read:     47
Infernal-confirmed tRNAs:     47
Bases scanned by Infernal:  4468
% seq scanned by Infernal:  0.1 %
Script CPU time:          0.85 s
Infernal CPU time:            40.84 s
Scan speed:               109.4 bp/sec

Infernal analysis of tRNAs ended: Wed Aug 23 12:10:55 PDT 2017

Overall scan speed: 80207.6 bp/sec