tRNA Gene Summary

Overview
High scoring set 1284
tRNAs decoding standard 20 AA 1283
Selenocysteine tRNAs (TCA) 1
Notable atypical predictions  
Anticodon/isotype mismatch 355
Unexpected anticodons 44
Non-canonical anticodon loop length 77
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 33156
Secondary filter (low feature scores, possible rep. element) 29723
Tertiary filter (excessive isotype copies, possible rep. element) 12730

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 29)
Ala AGC
2
Arg TCT
4
Leu CAA
6
Ile TAT
5
Tyr GTA
12
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
905
GGC
 
CGC
17
TGC
19
941
GlyACC
 
GCC
10
CCC
6
TCC
5
21
ProAGG
10
GGG
 
CGG
4
TGG
6
20
ThrAGT
9
GGT
 
CGT
3
TGT
3
15
ValAAC
8
GAC
 
CAC
8
TAC
5
21
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
13
GGA
 
CGA
4
TGA
4
ACT
 
GCT
11
 
 
 
 
32
ArgACG
10
GCG
 
CCG
4
TCG
6
 
 
 
 
CCT
7
TCT
5
32
LeuAAG
7
GAG
 
CAG
4
TAG
4
 
 
 
 
CAA
6
TAA
3
24
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
11
 
 
 
 
11
AsnATT
 
GTT
12
 
 
 
 
12
Lys 
 
 
 
CTT
15
TTT
12
27
AspATC
 
GTC
8
 
 
 
 
8
Glu 
 
 
 
CTC
5
TTC
7
12
HisATG
 
GTG
8
 
 
 
 
8
Gln 
 
 
 
CTG
10
TTG
5
15
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
12
GAT
 
CAT
 
TAT
5
17
iMet/Met 
 
 
 
CAT
11/11
 
 
22
TyrATA
 
GTA
12
 
 
 
 
12
Supres 
 
TCA
 
CTA
 
TTA
 
0
CysACA
 
GCA
25
 
 
 
 
25
Trp 
 
 
 
CCA
8
 
 
8
SelCys 
 
 
 
 
 
TCA
1
1